HL_8BHJ_082

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8BHJ|1|2|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHJ_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.4824

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8BHJ|1|2|G|462
8BHJ|1|2|U|463
8BHJ|1|2|U|464
8BHJ|1|2|A|465
8BHJ|1|2|A|466
8BHJ|1|2|U|467
8BHJ|1|2|A|468
8BHJ|1|2|C|469
8BHJ|1|2|C|470

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains