HL_8BHJ_092

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAAC

Length

35 nucleotides

Bulged bases

8BHJ|1|2|C|1028, 8BHJ|1|2|U|1029, 8BHJ|1|2|U|1030, 8BHJ|1|2|C|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHJ|1|2|G|1003
8BHJ|1|2|A|1004
8BHJ|1|2|A|1005
8BHJ|1|2|G|1006
8BHJ|1|2|U|1007
8BHJ|1|2|U|1008
8BHJ|1|2|U|1009
8BHJ|1|2|U|1010
8BHJ|1|2|C|1011
8BHJ|1|2|A|1012
8BHJ|1|2|G|1013
8BHJ|1|2|A|1014
8BHJ|1|2|G|1015
8BHJ|1|2|A|1016
8BHJ|1|2|U|1017
8BHJ|1|2|G|1018
8BHJ|1|2|A|1019
8BHJ|1|2|G|1020
8BHJ|1|2|A|1021
8BHJ|1|2|A|1022
8BHJ|1|2|U|1023
8BHJ|1|2|G|1024
8BHJ|1|2|U|1025
8BHJ|1|2|G|1026
8BHJ|1|2|C|1027
8BHJ|1|2|C|1028
8BHJ|1|2|U|1029
8BHJ|1|2|U|1030
8BHJ|1|2|C|1031
8BHJ|1|2|G|1032
8BHJ|1|2|G|1033
8BHJ|1|2|G|1034
8BHJ|1|2|A|1035
8BHJ|1|2|A|1036
8BHJ|1|2|C|1037

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain r

30S ribosomal protein S14

Chain w

30S ribosomal protein S19