HL_8BHJ_099

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

8BHJ|1|2|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHJ_099 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1947

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8BHJ|1|2|G|1356
8BHJ|1|2|A|1357
8BHJ|1|2|U|1358
8BHJ|1|2|C|1359
8BHJ|1|2|A|1360
8BHJ|1|2|G|1361
8BHJ|1|2|A|1362
8BHJ|1|2|A|1363
8BHJ|1|2|U|1364
8BHJ|1|2|G|1365
8BHJ|1|2|C|1366

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain m

30S ribosomal protein S9

Chain n

30S ribosomal protein S10

Chain r

30S ribosomal protein S14