HL_8BHJ_109

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

8BHJ|1|0|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHJ_109 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.2839

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8BHJ|1|0|U|1629
8BHJ|1|0|A|1630
8BHJ|1|0|G|1631
8BHJ|1|0|A|1632
8BHJ|1|0|G|1633
8BHJ|1|0|A|1634
8BHJ|1|0|A|1635
8BHJ|1|0|U|1636
8BHJ|1|0|A|1637

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains