HL_8BHL_077

3D structure

PDB id

8BHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHL_077 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1117

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8BHL|1|2|A|320
8BHL|1|2|A|321
8BHL|1|2|C|322
8BHL|1|2|U|323
8BHL|1|2|G|324
8BHL|1|2|A|325
8BHL|1|2|G|326
8BHL|1|2|A|327
8BHL|1|2|C|328
8BHL|1|2|A|329
8BHL|1|2|C|330
8BHL|1|2|G|331
8BHL|1|2|G|332
8BHL|1|2|U|333

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain t

30S ribosomal protein S16

Chain x

30S ribosomal protein S20