HL_8BHN_066

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

8BHN|1|0|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHN_066 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1151

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8BHN|1|0|G|2819
8BHN|1|0|A|2820
8BHN|1|0|A|2821
8BHN|1|0|G|2822
8BHN|1|0|A|2823
8BHN|1|0|C|2824
8BHN|1|0|G|2825
8BHN|1|0|A|2826
8BHN|1|0|C|2827

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain K

50S ribosomal protein L17