HL_8BHN_077

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHN_077 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.135

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8BHN|1|2|A|320
8BHN|1|2|A|321
8BHN|1|2|C|322
8BHN|1|2|U|323
8BHN|1|2|G|324
8BHN|1|2|A|325
8BHN|1|2|G|326
8BHN|1|2|A|327
8BHN|1|2|C|328
8BHN|1|2|A|329
8BHN|1|2|C|330
8BHN|1|2|G|331
8BHN|1|2|G|332
8BHN|1|2|U|333

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain t

30S ribosomal protein S16

Chain x

30S ribosomal protein S20