HL_8BHN_081

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8BHN|1|2|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHN_081 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2628

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8BHN|1|2|G|462
8BHN|1|2|U|463
8BHN|1|2|U|464
8BHN|1|2|A|465
8BHN|1|2|A|466
8BHN|1|2|U|467
8BHN|1|2|A|468
8BHN|1|2|C|469
8BHN|1|2|C|470

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains