HL_8BHN_106
3D structure
- PDB id
- 8BHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.85 Å
Loop
- Sequence
- G(5MU)UCGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 8BHN|1|5|U|55
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BHN_106 not in the Motif Atlas
- Homologous match to HL_5WT1_003
- Geometric discrepancy: 0.1515
- The information below is about HL_5WT1_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
8BHN|1|5|G|53
8BHN|1|5|5MU|54
8BHN|1|5|U|55
8BHN|1|5|C|56
8BHN|1|5|G|57
8BHN|1|5|A|58
8BHN|1|5|A|59
8BHN|1|5|U|60
8BHN|1|5|C|61
Current chains
- Chain 5
- Dipeptidyl A-site tRNA(Lys)
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- 50S ribosomal protein L16
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