HL_8BHP_099

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

8BHP|1|2|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHP_099 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1306

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8BHP|1|2|G|1356
8BHP|1|2|A|1357
8BHP|1|2|U|1358
8BHP|1|2|C|1359
8BHP|1|2|A|1360
8BHP|1|2|G|1361
8BHP|1|2|A|1362
8BHP|1|2|A|1363
8BHP|1|2|U|1364
8BHP|1|2|G|1365
8BHP|1|2|C|1366

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain m

30S ribosomal protein S9

Chain n

30S ribosomal protein S10

Chain r

30S ribosomal protein S14