HL_8BIL_105

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

8BIL|1|0|U|958, 8BIL|1|0|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIL_105 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.2277

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BIL|1|0|G|954
8BIL|1|0|U|955
8BIL|1|0|G|956
8BIL|1|0|C|957
8BIL|1|0|U|958
8BIL|1|0|A|959
8BIL|1|0|A|960
8BIL|1|0|C|961
8BIL|1|0|G|962
8BIL|1|0|U|963

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 1

5S ribosomal RNA; 5S rRNA

Chain J

50S ribosomal protein L16