HL_8BIL_106

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GUGCAAUGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIL_106 not in the Motif Atlas

Geometric match to HL_8H1B_001

Geometric discrepancy: 0.274

The information below is about HL_8H1B_001

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8BIL|1|0|G|2323
8BIL|1|0|U|2324
8BIL|1|0|G|2325
8BIL|1|0|C|2326
8BIL|1|0|A|2327
8BIL|1|0|A|2328
8BIL|1|0|U|2329
8BIL|1|0|G|2330
8BIL|1|0|G|2331
8BIL|1|0|C|2332

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain D

50S ribosomal protein L5

Chain T

50S ribosomal protein L27