HL_8BIM_038

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

8BIM|1|0|A|1614, 8BIM|1|0|A|1616, 8BIM|1|0|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIM_038 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1172

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8BIM|1|0|C|1612
8BIM|1|0|G|1613
8BIM|1|0|A|1614
8BIM|1|0|C|1615
8BIM|1|0|A|1616
8BIM|1|0|C|1617
8BIM|1|0|A|1618
8BIM|1|0|G|1619

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain P

50S ribosomal protein L22

Chain c

50S ribosomal protein L34