HL_8BIM_077

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIM_077 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1125

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8BIM|1|2|A|320
8BIM|1|2|A|321
8BIM|1|2|C|322
8BIM|1|2|U|323
8BIM|1|2|G|324
8BIM|1|2|A|325
8BIM|1|2|G|326
8BIM|1|2|A|327
8BIM|1|2|C|328
8BIM|1|2|A|329
8BIM|1|2|C|330
8BIM|1|2|G|331
8BIM|1|2|G|332
8BIM|1|2|U|333

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain t

30S ribosomal protein S16

Chain x

30S ribosomal protein S20