HL_8BIM_081

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8BIM|1|2|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIM_081 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2207

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8BIM|1|2|G|462
8BIM|1|2|U|463
8BIM|1|2|U|464
8BIM|1|2|A|465
8BIM|1|2|A|466
8BIM|1|2|U|467
8BIM|1|2|A|468
8BIM|1|2|C|469
8BIM|1|2|C|470

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains