HL_8BIM_106
3D structure
- PDB id
- 8BIM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 8BIM|1|1|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BIM_106 not in the Motif Atlas
- Homologous match to HL_5J7L_215
- Geometric discrepancy: 0.1689
- The information below is about HL_5J7L_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8BIM|1|1|A|34
8BIM|1|1|C|35
8BIM|1|1|C|36
8BIM|1|1|C|37
8BIM|1|1|C|38
8BIM|1|1|A|39
8BIM|1|1|U|40
8BIM|1|1|G|41
8BIM|1|1|C|42
8BIM|1|1|C|43
8BIM|1|1|G|44
8BIM|1|1|A|45
8BIM|1|1|A|46
8BIM|1|1|C|47
8BIM|1|1|U|48
Current chains
- Chain 1
- 5S rRNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 50S ribosomal protein L5
- Chain L
- 50S ribosomal protein L18
- Chain X
- 50S ribosomal protein L31
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