HL_8BIP_005

3D structure

PDB id

8BIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8BIP|1|1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIP_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1183

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8BIP|1|1|U|194
8BIP|1|1|U|195
8BIP|1|1|G|196
8BIP|1|1|G|197
8BIP|1|1|A|198
8BIP|1|1|A|199
8BIP|1|1|C|200
8BIP|1|1|A|201

Current chains

Chain 1

25S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-A

Chain LY

60S ribosomal protein L26-A