3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGUAAAUUCC
Length
10 nucleotides
Bulged bases
8BIP|1|1|G|304, 8BIP|1|1|U|305
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BIP_009 not in the Motif Atlas
Homologous match to HL_8C3A_009
Geometric discrepancy: 0.0756
The information below is about HL_8C3A_009
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_15076.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

8BIP|1|1|G|303
8BIP|1|1|G|304
8BIP|1|1|U|305
8BIP|1|1|A|306
8BIP|1|1|A|307
8BIP|1|1|A|308
8BIP|1|1|U|309
8BIP|1|1|U|310
8BIP|1|1|C|311
8BIP|1|1|C|312

Current chains

Chain 1
25S rRNA

Nearby chains

Chain LN
60S ribosomal protein L15-A
Chain La
60S ribosomal protein L28
Chain Li
60S ribosomal protein L36-A
Chain Lo
60S ribosomal protein L42-A

Coloring options:


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