HL_8BIP_055

3D structure

PDB id

8BIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8BIP|1|1|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIP_055 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1214

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8BIP|1|1|C|2616
8BIP|1|1|U|2617
8BIP|1|1|G|2618
8BIP|1|1|G|2619
8BIP|1|1|G|2620
8BIP|1|1|G|2621
8BIP|1|1|C|2622
8BIP|1|1|G|2623
8BIP|1|1|G|2624

Current chains

Chain 1

25S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain Lb

60S ribosomal protein L29