3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAAAAGGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BIP_058 not in the Motif Atlas
Homologous match to HL_8C3A_058
Geometric discrepancy: 0.0939
The information below is about HL_8C3A_058
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_93324.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
26

Unit IDs

8BIP|1|1|C|2693
8BIP|1|1|A|2694
8BIP|1|1|A|2695
8BIP|1|1|A|2696
8BIP|1|1|A|2697
8BIP|1|1|G|2698
8BIP|1|1|G|2699
8BIP|1|1|G|2700

Current chains

Chain 1
25S rRNA

Nearby chains

Chain LI
60S ribosomal protein L10
Chain LT
60S ribosomal protein L21-A
Chain Lo
60S ribosomal protein L42-A

Coloring options:


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