HL_8BIP_068

3D structure

PDB id

8BIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8BIP|1|1|G|3116, 8BIP|1|1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIP_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.067

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8BIP|1|1|C|3110
8BIP|1|1|U|3111
8BIP|1|1|G|3112
8BIP|1|1|A|3113
8BIP|1|1|A|3114
8BIP|1|1|C|3115
8BIP|1|1|G|3116
8BIP|1|1|C|3117
8BIP|1|1|C|3118
8BIP|1|1|U|3119
8BIP|1|1|C|3120
8BIP|1|1|U|3121
8BIP|1|1|A|3122
8BIP|1|1|A|3123
8BIP|1|1|G|3124

Current chains

Chain 1

25S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9-A

Chain LO

60S ribosomal protein L16-A

Chain Lm

60S ribosomal protein L40-A