HL_8BN3_002

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

8BN3|1|1|C|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_002 not in the Motif Atlas

Homologous match to HL_5TBW_002

Geometric discrepancy: 0.0577

The information below is about HL_5TBW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8BN3|1|1|C|69
8BN3|1|1|A|70
8BN3|1|1|A|71
8BN3|1|1|C|72
8BN3|1|1|C|73
8BN3|1|1|G|74

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M3

60S ribosomal protein L13-A

Chain M5

Ribosomal protein L15

Chain N8

60S ribosomal protein L28

Chain O6

60S ribosomal protein L36-A