HL_8BN3_005

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8BN3|1|1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0712

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8BN3|1|1|U|194
8BN3|1|1|U|195
8BN3|1|1|G|196
8BN3|1|1|G|197
8BN3|1|1|A|198
8BN3|1|1|A|199
8BN3|1|1|C|200
8BN3|1|1|A|201

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L4

RPL4A isoform 1

Chain N6

Large ribosomal subunit protein uL24A

Chain O2

RPL32 isoform 1