HL_8BN3_023
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CGAAAUG
- Length
- 7 nucleotides
- Bulged bases
- 8BN3|1|1|U|1028
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BN3_023 not in the Motif Atlas
- Homologous match to HL_5TBW_023
- Geometric discrepancy: 0.3921
- The information below is about HL_5TBW_023
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
8BN3|1|1|C|1023
8BN3|1|1|G|1024
8BN3|1|1|A|1025
8BN3|1|1|A|1026
8BN3|1|1|A|1027
8BN3|1|1|U|1028
8BN3|1|1|G|1029
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain C5
- RPS15 isoform 1
- Chain M1
- RPL11B isoform 1
- Chain SM
- STM1 isoform 1
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