HL_8BN3_032

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_032 not in the Motif Atlas

Homologous match to HL_5TBW_033

Geometric discrepancy: 0.0517

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BN3|1|1|G|1544
8BN3|1|1|A|1545
8BN3|1|1|A|1546
8BN3|1|1|G|1547
8BN3|1|1|C|1548
8BN3|1|1|U|1549

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M5

Ribosomal protein L15

Chain O7

Large ribosomal subunit protein eL37A