3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GUUAAGAUUC
Length
10 nucleotides
Bulged bases
8BN3|1|1|U|1606, 8BN3|1|1|U|1607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BN3_034 not in the Motif Atlas
Homologous match to HL_5TBW_035
Geometric discrepancy: 0.0578
The information below is about HL_5TBW_035
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_35087.1
Basepair signature
cWW-tWH-F-F-F-F
Number of instances in this motif group
7

Unit IDs

8BN3|1|1|G|1599
8BN3|1|1|U|1600
8BN3|1|1|U|1601
8BN3|1|1|A|1602
8BN3|1|1|A|1603
8BN3|1|1|G|1604
8BN3|1|1|A|1605
8BN3|1|1|U|1606
8BN3|1|1|U|1607
8BN3|1|1|C|1608

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain M9
60S ribosomal protein L19-A
Chain N5
60S ribosomal protein L25
Chain O4
Large ribosomal subunit protein eL34A

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