HL_8BN3_035

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_035 not in the Motif Atlas

Homologous match to HL_5TBW_036

Geometric discrepancy: 0.0578

The information below is about HL_5TBW_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BN3|1|1|G|1634
8BN3|1|1|G|1635
8BN3|1|1|U|1636
8BN3|1|1|A|1637
8BN3|1|1|A|1638
8BN3|1|1|C|1639

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N7

60S ribosomal protein L27-A

Chain O4

Large ribosomal subunit protein eL34A