HL_8BN3_053

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8BN3|1|1|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_053 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.0868

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8BN3|1|1|C|2616
8BN3|1|1|U|2617
8BN3|1|1|G|2618
8BN3|1|1|G|2619
8BN3|1|1|G|2620
8BN3|1|1|G|2621
8BN3|1|1|C|2622
8BN3|1|1|G|2623
8BN3|1|1|G|2624

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M0

RPL10 isoform 1

Chain N9

60S ribosomal protein L29

Chain eI

Eukaryotic translation initiation factor 5A