HL_8BN3_055

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_055 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.0944

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8BN3|1|1|A|2673
8BN3|1|1|A|2674
8BN3|1|1|C|2675
8BN3|1|1|A|2676
8BN3|1|1|G|2677
8BN3|1|1|A|2678
8BN3|1|1|A|2679
8BN3|1|1|A|2680
8BN3|1|1|U|2681

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain C8

40S ribosomal protein S18-A

Chain M1

RPL11B isoform 1

Chain SM

STM1 isoform 1