HL_8BN3_058

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_058 not in the Motif Atlas

Homologous match to HL_5TBW_059

Geometric discrepancy: 0.0759

The information below is about HL_5TBW_059

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BN3|1|1|U|2744
8BN3|1|1|G|2745
8BN3|1|1|A|2746
8BN3|1|1|A|2747
8BN3|1|1|A|2748
8BN3|1|1|G|2749

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L5

RPL5 isoform 1

Chain N1

60S ribosomal protein L21-A