HL_8BN3_072

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

8BN3|1|2|U|77

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_072 not in the Motif Atlas

Homologous match to HL_8C3A_193

Geometric discrepancy: 0.4864

The information below is about HL_8C3A_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_21248.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8BN3|1|2|C|70
8BN3|1|2|A|71
8BN3|1|2|A|72
8BN3|1|2|U|73
8BN3|1|2|U|74
8BN3|1|2|U|75
8BN3|1|2|A|76
8BN3|1|2|U|77
8BN3|1|2|A|78
8BN3|1|2|C|79
8BN3|1|2|A|80
8BN3|1|2|G|81

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S6

Small ribosomal subunit protein eS6A