HL_8BN3_080

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8BN3|1|2|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_080 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.0919

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8BN3|1|2|C|414
8BN3|1|2|C|415
8BN3|1|2|A|416
8BN3|1|2|A|417
8BN3|1|2|G|418
8BN3|1|2|G|419

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N3

60S ribosomal protein L23-A

Chain S6

Small ribosomal subunit protein eS6A