HL_8BN3_086

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCUUGAGUCCUUGUGGCUCUUGG

Length

23 nucleotides

Bulged bases

8BN3|1|2|C|709, 8BN3|1|2|G|712, 8BN3|1|2|A|713, 8BN3|1|2|U|715, 8BN3|1|2|C|717, 8BN3|1|2|U|718, 8BN3|1|2|G|720, 8BN3|1|2|U|721, 8BN3|1|2|G|723, 8BN3|1|2|G|729

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_086 not in the Motif Atlas

Geometric match to HL_4V9F_004

Geometric discrepancy: 0.3037

The information below is about HL_4V9F_004

Detailed Annotation

Mini UNCG related

Broad Annotation

Mini UNCG related

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

8BN3|1|2|C|708
8BN3|1|2|C|709
8BN3|1|2|U|710
8BN3|1|2|U|711
8BN3|1|2|G|712
8BN3|1|2|A|713
8BN3|1|2|G|714
8BN3|1|2|U|715
8BN3|1|2|C|716
8BN3|1|2|C|717
8BN3|1|2|U|718
8BN3|1|2|U|719
8BN3|1|2|G|720
8BN3|1|2|U|721
8BN3|1|2|G|722
8BN3|1|2|G|723
8BN3|1|2|C|724
8BN3|1|2|U|725
8BN3|1|2|C|726
8BN3|1|2|U|727
8BN3|1|2|U|728
8BN3|1|2|G|729
8BN3|1|2|G|730

Current chains

Chain 2

18S ribosomal RNA

Nearby chains