HL_8BN3_087

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8BN3|1|2|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_087 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.0827

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8BN3|1|2|U|764
8BN3|1|2|G|765
8BN3|1|2|U|766
8BN3|1|2|U|767
8BN3|1|2|C|768
8BN3|1|2|A|769
8BN3|1|2|A|770
8BN3|1|2|A|771
8BN3|1|2|G|772

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S4

Small ribosomal subunit protein eS4A

Chain S9

Small ribosomal subunit protein uS4A