HL_8BN3_091

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_091 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.0563

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BN3|1|2|C|937
8BN3|1|2|G|938
8BN3|1|2|A|939
8BN3|1|2|A|940
8BN3|1|2|A|941
8BN3|1|2|G|942

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C3

40S ribosomal protein S13

Chain D6

RPS26B isoform 1