HL_8BN3_093

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

8BN3|1|2|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_093 not in the Motif Atlas

Geometric match to HL_4V88_192

Geometric discrepancy: 0.1183

The information below is about HL_4V88_192

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8BN3|1|2|C|1051
8BN3|1|2|U|1052
8BN3|1|2|U|1053
8BN3|1|2|G|1054

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D7

40S ribosomal protein S27-A

Chain S1

Small ribosomal subunit protein eS1