3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BN3_095 not in the Motif Atlas
Homologous match to HL_8C3A_216
Geometric discrepancy: 0.0771
The information below is about HL_8C3A_216
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.5
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
302

Unit IDs

8BN3|1|2|C|1108
8BN3|1|2|G|1109
8BN3|1|2|C|1110
8BN3|1|2|A|1111
8BN3|1|2|A|1112
8BN3|1|2|G|1113

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain Q1
Large ribosomal subunit protein eL41B
Chain Q3
60S ribosomal protein L43-A

Coloring options:


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