HL_8BN3_101

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

8BN3|1|2|C|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_101 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.356

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

8BN3|1|2|U|1383
8BN3|1|2|U|1384
8BN3|1|2|U|1385
8BN3|1|2|C|1386
8BN3|1|2|A|1387
8BN3|1|2|A|1388
8BN3|1|2|G|1389

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C7

ES17

Chain D8

RPS28A isoform 1