HL_8BN3_104

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

8BN3|1|2|G|1588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_104 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.0985

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8BN3|1|2|G|1581
8BN3|1|2|U|1582
8BN3|1|2|C|1583
8BN3|1|2|A|1584
8BN3|1|2|U|1585
8BN3|1|2|C|1586
8BN3|1|2|A|1587
8BN3|1|2|G|1588
8BN3|1|2|C|1589

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain C9

40S ribosomal protein S19-A

Chain D0

RPS20 isoform 1

Chain D9

RPS29A isoform 1