HL_8BN3_109
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 8BN3|1|4|U|82, 8BN3|1|4|C|84, 8BN3|1|4|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BN3_109 not in the Motif Atlas
- Homologous match to HL_8P9A_187
- Geometric discrepancy: 0.5833
- The information below is about HL_8P9A_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_51921.1
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8BN3|1|4|U|69
8BN3|1|4|G|70
8BN3|1|4|A|71
8BN3|1|4|A|72
8BN3|1|4|U|73
8BN3|1|4|U|74
8BN3|1|4|G|75
8BN3|1|4|C|76
8BN3|1|4|A|77
8BN3|1|4|G|78
8BN3|1|4|A|79
8BN3|1|4|A|80
8BN3|1|4|U|81
8BN3|1|4|U|82
8BN3|1|4|C|83
8BN3|1|4|C|84
8BN3|1|4|G|85
8BN3|1|4|U|86
8BN3|1|4|G|87
8BN3|1|4|A|88
8BN3|1|4|A|89
Current chains
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain N6
- Large ribosomal subunit protein uL24A
- Chain O5
- 60S ribosomal protein L35-A
- Chain O7
- Large ribosomal subunit protein eL37A
- Chain O9
- 60S ribosomal protein L39
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