HL_8BN3_115

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

8BN3|1|2|U|277, 8BN3|1|2|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_115 not in the Motif Atlas

Geometric match to HL_5J7L_214

Geometric discrepancy: 0.3289

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8BN3|1|2|C|275
8BN3|1|2|C|276
8BN3|1|2|U|277
8BN3|1|2|U|278
8BN3|1|2|G|279
8BN3|1|2|U|280
8BN3|1|2|G|281

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S6

Small ribosomal subunit protein eS6A