3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UUCCCGUCCGAUCA
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BN3_118 not in the Motif Atlas
Homologous match to HL_8P9A_183
Geometric discrepancy: 0.0759
The information below is about HL_8P9A_183
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_13971.1
Basepair signature
cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
Number of instances in this motif group
2

Unit IDs

8BN3|1|3|U|32
8BN3|1|3|U|33
8BN3|1|3|C|34
8BN3|1|3|C|35
8BN3|1|3|C|36
8BN3|1|3|G|37
8BN3|1|3|U|38
8BN3|1|3|C|39
8BN3|1|3|C|40
8BN3|1|3|G|41
8BN3|1|3|A|42
8BN3|1|3|U|43
8BN3|1|3|C|44
8BN3|1|3|A|45

Current chains

Chain 3
5S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain L5
RPL5 isoform 1
Chain M1
RPL11B isoform 1
Chain SM
STM1 isoform 1

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