HL_8BN3_118
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BN3_118 not in the Motif Atlas
- Homologous match to HL_8P9A_183
- Geometric discrepancy: 0.0759
- The information below is about HL_8P9A_183
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13971.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8BN3|1|3|U|32
8BN3|1|3|U|33
8BN3|1|3|C|34
8BN3|1|3|C|35
8BN3|1|3|C|36
8BN3|1|3|G|37
8BN3|1|3|U|38
8BN3|1|3|C|39
8BN3|1|3|C|40
8BN3|1|3|G|41
8BN3|1|3|A|42
8BN3|1|3|U|43
8BN3|1|3|C|44
8BN3|1|3|A|45
Current chains
- Chain 3
- 5S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L5
- RPL5 isoform 1
- Chain M1
- RPL11B isoform 1
- Chain SM
- STM1 isoform 1
Coloring options: