HL_8BPO_004
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGCGGCG
- Length
- 7 nucleotides
- Bulged bases
- 8BPO|1|A1|G|134, 8BPO|1|A1|G|135
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BPO_004 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.3365
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BPO|1|A1|C|131
8BPO|1|A1|G|132
8BPO|1|A1|C|133
8BPO|1|A1|G|134
8BPO|1|A1|G|135
8BPO|1|A1|C|136
8BPO|1|A1|G|137
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain C1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain M2
- Ribosomal protein L15
- Chain g2
- 60S ribosomal protein L35
- Chain i2
- Ribosomal protein L37
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