HL_8BPO_005
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UCUGAUCG
- Length
- 8 nucleotides
- Bulged bases
- 8BPO|1|A1|C|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BPO_005 not in the Motif Atlas
- Homologous match to HL_5TBW_005
- Geometric discrepancy: 0.3113
- The information below is about HL_5TBW_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
8BPO|1|A1|U|204
8BPO|1|A1|C|205
8BPO|1|A1|U|206
8BPO|1|A1|G|207
8BPO|1|A1|A|208
8BPO|1|A1|U|209
8BPO|1|A1|C|210
8BPO|1|A1|G|211
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain X2
- Ribosomal protein L26
- Chain d2
- Ribosomal protein L32
- Chain t2
- Tetratricopeptide repeat protein 5
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