HL_8BPO_012

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCCCGUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_012 not in the Motif Atlas

Geometric match to HL_7UQ6_001

Geometric discrepancy: 0.2941

The information below is about HL_7UQ6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

8BPO|1|A1|U|520
8BPO|1|A1|C|521
8BPO|1|A1|C|522
8BPO|1|A1|C|523
8BPO|1|A1|G|638
8BPO|1|A1|U|639
8BPO|1|A1|C|640
8BPO|1|A1|G|641

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain K2

60S ribosomal protein L13