HL_8BPO_021

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

8BPO|1|A1|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_021 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3226

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8BPO|1|A1|G|1479
8BPO|1|A1|C|1480
8BPO|1|A1|C|1481
8BPO|1|A1|G|1482
8BPO|1|A1|C|1483
8BPO|1|A1|G|1484
8BPO|1|A1|C|1485
8BPO|1|A1|C|1486

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain K2

60S ribosomal protein L13

Chain h2

60S ribosomal protein L36