HL_8BPO_026

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

8BPO|1|A1|C|1768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_026 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.5355

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BPO|1|A1|C|1763
8BPO|1|A1|G|1764
8BPO|1|A1|A|1765
8BPO|1|A1|A|1766
8BPO|1|A1|A|1767
8BPO|1|A1|C|1768
8BPO|1|A1|G|1769

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain J2

60S ribosomal protein L11