HL_8BPO_030

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUGGCCAUGGAAGUCGGAAUCC

Length

23 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_030 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.325

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8BPO|1|A1|G|1972
8BPO|1|A1|G|1973
8BPO|1|A1|U|1974
8BPO|1|A1|G|1975
8BPO|1|A1|G|1976
8BPO|1|A1|C|1977
8BPO|1|A1|C|1978
8BPO|1|A1|A|1979
8BPO|1|A1|U|1980
8BPO|1|A1|G|1981
8BPO|1|A1|G|1982
8BPO|1|A1|A|1983
8BPO|1|A1|A|1984
8BPO|1|A1|G|1985
8BPO|1|A1|U|1986
8BPO|1|A1|C|1987
8BPO|1|A1|G|1988
8BPO|1|A1|G|1989
8BPO|1|A1|A|1990
8BPO|1|A1|A|1991
8BPO|1|A1|U|1992
8BPO|1|A1|C|1993
8BPO|1|A1|C|1994

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain I2

Ribosomal protein L10

Chain q2

60S acidic ribosomal protein P0

Chain r2

60S ribosomal protein L12