HL_8BPO_031
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG
- Length
- 40 nucleotides
- Bulged bases
- 8BPO|1|A1|C|2094, 8BPO|1|A1|A|2104, 8BPO|1|A1|A|2105, 8BPO|1|A1|U|2267, 8BPO|1|A1|C|2269
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BPO|1|A1|C|2087
8BPO|1|A1|A|2088
8BPO|1|A1|G|2089
8BPO|1|A1|U|2090
8BPO|1|A1|C|2091
8BPO|1|A1|G|2092
8BPO|1|A1|G|2093
8BPO|1|A1|C|2094
8BPO|1|A1|A|2095
8BPO|1|A1|G|2096
8BPO|1|A1|A|2097
8BPO|1|A1|G|2098
8BPO|1|A1|C|2099
8BPO|1|A1|G|2100
8BPO|1|A1|A|2101
8BPO|1|A1|G|2102
8BPO|1|A1|A|2103
8BPO|1|A1|A|2104
8BPO|1|A1|A|2105
8BPO|1|A1|G|2106
8BPO|1|A1|A|2107
8BPO|1|A1|G|2108
8BPO|1|A1|A|2109
8BPO|1|A1|G|2110
8BPO|1|A1|U|2111
8BPO|1|A1|G|2112
8BPO|1|A1|G|2113
8BPO|1|A1|C|2258
8BPO|1|A1|G|2259
8BPO|1|A1|C|2260
8BPO|1|A1|G|2261
8BPO|1|A1|G|2262
8BPO|1|A1|A|2263
8BPO|1|A1|C|2264
8BPO|1|A1|G|2265
8BPO|1|A1|C|2266
8BPO|1|A1|U|2267
8BPO|1|A1|A|2268
8BPO|1|A1|C|2269
8BPO|1|A1|G|2270
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain C2
- 60S ribosomal protein L4
- Chain E2
- 60S ribosomal protein L6
- Chain F2
- 60S ribosomal protein L7
- Chain P2
- Ribosomal protein L18
- Chain a2
- 60S ribosomal protein L29
- Chain p2
- 60S ribosomal protein L28
Coloring options: