HL_8BPO_033
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- ACGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BPO_033 not in the Motif Atlas
- Homologous match to HL_8C3A_031
- Geometric discrepancy: 0.1402
- The information below is about HL_8C3A_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8BPO|1|A1|A|2376
8BPO|1|A1|C|2377
8BPO|1|A1|G|2378
8BPO|1|A1|A|2379
8BPO|1|A1|G|2380
8BPO|1|A1|A|2381
8BPO|1|A1|A|2382
8BPO|1|A1|C|2383
8BPO|1|A1|U|2384
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain O2
- 60S ribosomal protein L17
- Chain Q2
- 60S ribosomal protein L19
- Chain c2
- 60S ribosomal protein L31
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